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Table 1 Primers and probes in genotyping

From: Association between genetic polymorphisms and carotid atherosclerosis in patients treated with radiotherapy for nasopharyngeal carcinoma

Genes SNPs Forward primers Reward primers Probes Genotyping methods
SOD2 rs4880 CCA GCC TGC GTA GAC GGT CGT GGT GCT TGC TGT GGT G AGC CCA GAT ACC CCA AAG CCG GAG CCA Gaa UPMA
SOD3 rs2536512 AGG ACT CAG CGG AGC CCA ACT 18 T + TTG GCA CGG GAC GCA AGC TG - RFLP (BstUI)
CAT rs769217 TGT TAC CGC CCC TAG TCA GTG TC CAC CTC GGG AGC ACC TTT ACC A - RFLP (BstXI)
PON1 rs662 10 T + GAA TGA TAT TGT TGC TGT GGG ACC TGA G CCA TCG GGT GAA CTG TTG ATT CCA TTA G - RFLP (MboI)
rs705379 AAA TGG GAC TTT TGG CTG A ACA CTG ACG GGC TAG GA CGC CGA TTT GCC CGC CCC GCC CCT CCC Caa ta UPMA
PPARG rs3856806 GCT GAA CCA TCC TGA GTC CTC 33 T + TGG AAG AAG GGA CAT GTT GGC - RFLP (NspI)
ADIPOQ rs1501299 CAC CGA CAG AGC CTT GCA CAT TAG GGG GGT CTG CAC AGG TTG GAT G - RFLP (BsmI)
rs2241766 15 T + GAT GCT GTT GCT GGG AGC TGT 30 T + CCC GAG A CGC CAT CCA ACC TGT GC - RFLP (AvaI)
IL10 rs1800872 GGA GCC TGG AAC ACA TCC TG AAA TGA GGG GGT GGG CTA AAT ATC ACC CCC CCT GTC CTG TAG GAA GCC AGt CTa ata UPMA
TGFB1 rs1800469 TGA CCC CAG CTA AGG CAT G TTT TTC CTC TTC TCC CGA CCA G - RFLP (Eco81I)
rs1800470 TCA CCA GCT CCA TGT CGA TA ATC CCT GTT CGC GCT CTC CAG CAG CGG TAG CAG CAG CGG CAG CAG Caa UPMA
rs4803455 TCA CTG CAA CCT CTG TGT CTT 20 T + CTG CAT ATT TGA CAC CCT GTA TT - RFLP (TasI)
NOS3 rs1799983 ACC CCA GAA AAC GGT CGC TTC G CCC CGA TTT CCA GCA GCA TGT TG - RFLP (MboI)
  1. UPMA, unlabeled probe melting analysis; RFLP, restriction fragment length polymorphism.
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Radiation Oncology

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