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Table 1 Primers and probes in genotyping

From: Association between genetic polymorphisms and carotid atherosclerosis in patients treated with radiotherapy for nasopharyngeal carcinoma

Genes

SNPs

Forward primers

Reward primers

Probes

Genotyping methods

SOD2

rs4880

CCA GCC TGC GTA GAC GGT

CGT GGT GCT TGC TGT GGT G

AGC CCA GAT ACC CCA AAG CCG GAG CCA Gaa

UPMA

SOD3

rs2536512

AGG ACT CAG CGG AGC CCA ACT

18 T + TTG GCA CGG GAC GCA AGC TG

-

RFLP (BstUI)

CAT

rs769217

TGT TAC CGC CCC TAG TCA GTG TC

CAC CTC GGG AGC ACC TTT ACC A

-

RFLP (BstXI)

PON1

rs662

10 T + GAA TGA TAT TGT TGC TGT GGG ACC TGA G

CCA TCG GGT GAA CTG TTG ATT CCA TTA G

-

RFLP (MboI)

rs705379

AAA TGG GAC TTT TGG CTG A

ACA CTG ACG GGC TAG GA

CGC CGA TTT GCC CGC CCC GCC CCT CCC Caa ta

UPMA

PPARG

rs3856806

GCT GAA CCA TCC TGA GTC CTC

33 T + TGG AAG AAG GGA CAT GTT GGC

-

RFLP (NspI)

ADIPOQ

rs1501299

CAC CGA CAG AGC CTT GCA CAT TAG

GGG GGT CTG CAC AGG TTG GAT G

-

RFLP (BsmI)

rs2241766

15 T + GAT GCT GTT GCT GGG AGC TGT

30 T + CCC GAG A CGC CAT CCA ACC TGT GC

-

RFLP (AvaI)

IL10

rs1800872

GGA GCC TGG AAC ACA TCC TG

AAA TGA GGG GGT GGG CTA AAT ATC

ACC CCC CCT GTC CTG TAG GAA GCC AGt CTa ata

UPMA

TGFB1

rs1800469

TGA CCC CAG CTA AGG CAT G

TTT TTC CTC TTC TCC CGA CCA G

-

RFLP (Eco81I)

rs1800470

TCA CCA GCT CCA TGT CGA TA

ATC CCT GTT CGC GCT CTC

CAG CAG CGG TAG CAG CAG CGG CAG CAG Caa

UPMA

rs4803455

TCA CTG CAA CCT CTG TGT CTT

20 T + CTG CAT ATT TGA CAC CCT GTA TT

-

RFLP (TasI)

NOS3

rs1799983

ACC CCA GAA AAC GGT CGC TTC G

CCC CGA TTT CCA GCA GCA TGT TG

-

RFLP (MboI)

  1. UPMA, unlabeled probe melting analysis; RFLP, restriction fragment length polymorphism.