Table 2 Integration of differentially expressed genes with array CGH data

PTGS1

16.417

gain

PTGS1

20.52

gain

TLR4

10.333

IL7R

10.643

SLC2A6

7.167

SLC2A6

7.13

TNC

5.478

SLC12A7

6.931

PHF11

4.886

COL5A1

6.608

PAPPA

4.594

CERCAM

6.381

MX2

4.457

PDZD2

5.726

LHFP

4.442

PTGER4

5.05

RGCC

4.285

STXBP1

4.377

GTF2F2

3.767

INPP5E

3.797

BACE2

3.755

NKD2

3.785

NEK3

3.564

SLC1A3

3.784

MSANTD3

3.198

RICTOR

3.675

FNDC3A

2.971

PTGES

3.409

RC3H2

2.77

MVB12B

3.381

INPP5E

2.584

CDK5RAP2

3.362

RPL7A

2.543

PRRC2B

3.155

UFM1

2.485

SEC16A

2.948

SLC25A29

0.263

loss

RC3H2

2.855

RCOR1

0.297

USP20

2.714

HLCS

0.305

RPL7A

2.59

CCDC85C

0.318

CARD9

2.572

IPO5

0.322

TOR1B

2.529

WRB

0.326

TRAF1

2.524

PIGP

0.329

QSOX2

2.492

CDCA4

0.36

TLR4

2.473

ZBTB42

0.361

UGCG

2.463

EVA1C

0.37

ZBTB43

2.396

BTBD6

0.37

C9orf9

2.327

TTC3

0.374

RAD1

2.255

CLN5

0.388

TRIM32

2.241

CCNK

0.389

PTRH1

2.221

DSC3

0.389

CEP72

2.208

PPP1R13B

0.389

DAP

2.035

DYRK1A

0.393

C9orf114

2.019

SIVA1

0.4

SDHA

2.013

BRF1

0.404

DOLPP1

1.997

IMPACT

0.41

RALGPS1

1.996

IFNGR2

0.416

SURF1

1.958

TIAM1

0.423

MTRR

1.855

PCCA

0.426

C5orf42

1.849

EML1

0.432

ANKRD33B

0.609

HMGN1

0.439

OR4C6

0.576

SETD3

0.441

NPR3

0.43

OSBPL1A

0.462

GOLGA6L6

0.505

loss

IFNAR2

0.54

ZNF480

0.532

LAMA3

2.1

NBPF10

1.909

CRIP1

2.463

TPTE

2.342

CDH2

5.373

NBPF9

2.945